Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim47Q8C0E3 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Gm14494-201ENSMUST00000118786 435 ntBASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim47Q8C0E3 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim47Q8C0E3 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim47Q8C0E3 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim47Q8C0E3 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim47Q8C0E3 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.08■□□□□ 0.33
Trim47Q8C0E3 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.33
Trim47Q8C0E3 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim47Q8C0E3 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Trim47Q8C0E3 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim47Q8C0E3 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Gm13597-201ENSMUST00000121239 375 ntBASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Gm11594-201ENSMUST00000122313 162 ntBASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim47Q8C0E3 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms