Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Usp47Q8BY87 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Usp47Q8BY87 Ndufaf2-202ENSMUST00000223734 556 ntBASIC21.72■■□□□ 1.07
Usp47Q8BY87 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp47Q8BY87 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp47Q8BY87 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp47Q8BY87 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC21.71■■□□□ 1.07
Usp47Q8BY87 AC124549.3-201ENSMUST00000225541 367 ntBASIC21.71■■□□□ 1.07
Usp47Q8BY87 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp47Q8BY87 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Usp47Q8BY87 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC21.7■■□□□ 1.07
Usp47Q8BY87 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
Usp47Q8BY87 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Gm27301-201ENSMUST00000184012 127 ntBASIC21.7■■□□□ 1.06
Usp47Q8BY87 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC21.7■■□□□ 1.06
Usp47Q8BY87 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp47Q8BY87 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp47Q8BY87 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Gm9385-201ENSMUST00000117563 472 ntBASIC21.68■■□□□ 1.06
Usp47Q8BY87 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Gm17271-201ENSMUST00000165535 355 ntBASIC21.68■■□□□ 1.06
Usp47Q8BY87 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC21.68■■□□□ 1.06
Usp47Q8BY87 Gm45612-201ENSMUST00000211320 160 ntBASIC21.68■■□□□ 1.06
Usp47Q8BY87 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp47Q8BY87 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp47Q8BY87 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms