Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 AC124732.2-201ENSMUST00000221977 316 ntBASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3aQ3ULJ3 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Upf3aQ3ULJ3 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Upf3aQ3ULJ3 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Upf3aQ3ULJ3 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Upf3aQ3ULJ3 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Upf3aQ3ULJ3 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Upf3aQ3ULJ3 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Upf3aQ3ULJ3 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Gm22175-201ENSMUST00000175007 78 ntBASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3aQ3ULJ3 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Gm27321-201ENSMUST00000185021 205 ntBASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 CT030684.1-201ENSMUST00000227292 914 ntBASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3aQ3ULJ3 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms