Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.17□□□□□ -0.3
Col8a1Q00780 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC13.17□□□□□ -0.3
Col8a1Q00780 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Gm15358-201ENSMUST00000119249 520 ntBASIC13.17□□□□□ -0.3
Col8a1Q00780 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.17□□□□□ -0.3
Col8a1Q00780 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC13.17□□□□□ -0.3
Col8a1Q00780 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
Col8a1Q00780 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Gm11620-201ENSMUST00000118770 1845 ntBASIC13.16□□□□□ -0.3
Col8a1Q00780 Gm16401-202ENSMUST00000197463 2074 ntBASIC13.16□□□□□ -0.3
Col8a1Q00780 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Gm8344-201ENSMUST00000119813 856 ntBASIC13.16□□□□□ -0.3
Col8a1Q00780 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col8a1Q00780 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.16□□□□□ -0.3
Col8a1Q00780 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
Col8a1Q00780 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC13.16□□□□□ -0.3
Col8a1Q00780 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col8a1Q00780 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC13.16□□□□□ -0.3
Col8a1Q00780 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col8a1Q00780 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.15□□□□□ -0.3
Col8a1Q00780 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.15□□□□□ -0.3
Col8a1Q00780 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Hivep3-201ENSMUST00000084306 2973 ntBASIC13.15□□□□□ -0.3
Col8a1Q00780 Gm26917-202ENSMUST00000192833 3329 ntBASIC13.15□□□□□ -0.3
Col8a1Q00780 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.15□□□□□ -0.3
Col8a1Q00780 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Col8a1Q00780 AC107711.5-202ENSMUST00000226429 702 ntBASIC13.15□□□□□ -0.3
Col8a1Q00780 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC13.15□□□□□ -0.3
Col8a1Q00780 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col8a1Q00780 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col8a1Q00780 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col8a1Q00780 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col8a1Q00780 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Col8a1Q00780 Gm13294-201ENSMUST00000121757 1330 ntBASIC13.14□□□□□ -0.31
Col8a1Q00780 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col8a1Q00780 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms