Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Gm8396-201ENSMUST00000057361 823 ntBASIC13.34□□□□□ -0.27
Nkx3-1P97436 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC13.34□□□□□ -0.27
Nkx3-1P97436 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC13.33□□□□□ -0.27
Nkx3-1P97436 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Nkx3-1P97436 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Nkx3-1P97436 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Gm5177-201ENSMUST00000183092 997 ntBASIC13.33□□□□□ -0.28
Nkx3-1P97436 Gm27301-201ENSMUST00000184012 127 ntBASIC13.33□□□□□ -0.28
Nkx3-1P97436 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.33□□□□□ -0.28
Nkx3-1P97436 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC13.33□□□□□ -0.28
Nkx3-1P97436 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Rbfox2-206ENSMUST00000227314 1810 ntBASIC13.33□□□□□ -0.28
Nkx3-1P97436 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Nkx3-1P97436 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.32□□□□□ -0.28
Nkx3-1P97436 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nkx3-1P97436 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Gm15427-201ENSMUST00000117288 531 ntBASIC13.31□□□□□ -0.28
Nkx3-1P97436 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.31□□□□□ -0.28
Nkx3-1P97436 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.31□□□□□ -0.28
Nkx3-1P97436 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
Nkx3-1P97436 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.31□□□□□ -0.28
Nkx3-1P97436 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Gm18246-201ENSMUST00000221023 728 ntBASIC13.31□□□□□ -0.28
Nkx3-1P97436 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nkx3-1P97436 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms