Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Sox3P53784 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Sox3P53784 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.81□□□□□ -0.04
Sox3P53784 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Sox3P53784 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.81□□□□□ -0.04
Sox3P53784 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.81□□□□□ -0.04
Sox3P53784 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Gm8396-201ENSMUST00000057361 823 ntBASIC14.81□□□□□ -0.04
Sox3P53784 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC14.81□□□□□ -0.04
Sox3P53784 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sox3P53784 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Sox3P53784 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Gm45203-201ENSMUST00000206384 1831 ntBASIC14.8□□□□□ -0.04
Sox3P53784 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC14.8□□□□□ -0.04
Sox3P53784 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC14.8□□□□□ -0.04
Sox3P53784 Mir6956-201ENSMUST00000183598 62 ntBASIC14.8□□□□□ -0.04
Sox3P53784 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Sox3P53784 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
Sox3P53784 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Sox3P53784 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Sox3P53784 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Sox3P53784 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Sox3P53784 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox3P53784 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Sox3P53784 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.79□□□□□ -0.04
Sox3P53784 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC14.79□□□□□ -0.04
Sox3P53784 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC14.79□□□□□ -0.04
Sox3P53784 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
Sox3P53784 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.79□□□□□ -0.04
Sox3P53784 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.79□□□□□ -0.04
Sox3P53784 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC14.79□□□□□ -0.04
Sox3P53784 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
Sox3P53784 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Sox3P53784 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox3P53784 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sox3P53784 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC14.78□□□□□ -0.04
Sox3P53784 Wnt10b-204ENSMUST00000226655 1807 ntBASIC14.78□□□□□ -0.04
Sox3P53784 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
Sox3P53784 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Sox3P53784 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox3P53784 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms