Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
Nr1i3O35627 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.62■□□□□ 0.25
Nr1i3O35627 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Nr1i3O35627 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1i3O35627 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.61■□□□□ 0.25
Nr1i3O35627 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Nr1i3O35627 AC124569.2-201ENSMUST00000225998 818 ntBASIC16.61■□□□□ 0.25
Nr1i3O35627 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
Nr1i3O35627 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1i3O35627 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.6■□□□□ 0.25
Nr1i3O35627 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.6■□□□□ 0.25
Nr1i3O35627 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC16.6■□□□□ 0.25
Nr1i3O35627 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC16.6■□□□□ 0.25
Nr1i3O35627 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Gm7506-201ENSMUST00000207758 815 ntBASIC16.6■□□□□ 0.25
Nr1i3O35627 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.6■□□□□ 0.25
Nr1i3O35627 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC16.6■□□□□ 0.25
Nr1i3O35627 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1i3O35627 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Gm15358-201ENSMUST00000119249 520 ntBASIC16.59■□□□□ 0.25
Nr1i3O35627 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.59■□□□□ 0.25
Nr1i3O35627 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1i3O35627 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.59■□□□□ 0.25
Nr1i3O35627 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1i3O35627 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1i3O35627 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms