Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Mir770-201ENSMUST00000103252 94 ntBASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Gm13836-201ENSMUST00000121159 501 ntBASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Lima1Q9ERG0 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Gm44443-201ENSMUST00000204396 5633 ntBASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Lima1Q9ERG0 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Gm6659-201ENSMUST00000174752 547 ntBASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Lima1Q9ERG0 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Wnt10b-206ENSMUST00000228546 2709 ntBASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Gm8258-201ENSMUST00000055593 1449 ntBASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Lima1Q9ERG0 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Lima1Q9ERG0 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms