Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cpsf1Q9EPU4 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
Cpsf1Q9EPU4 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cpsf1Q9EPU4 Tfap2a-203ENSMUST00000223869 2037 ntBASIC21.18■□□□□ 0.98
Cpsf1Q9EPU4 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cpsf1Q9EPU4 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Asic1-205ENSMUST00000228185 1818 ntBASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Cpsf1Q9EPU4 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Gm5312-201ENSMUST00000203728 547 ntBASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cpsf1Q9EPU4 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Mir6990-201ENSMUST00000183724 91 ntBASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Gm44335-201ENSMUST00000196879 141 ntBASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Gm44297-201ENSMUST00000198304 141 ntBASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Gm44346-201ENSMUST00000198851 141 ntBASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Gpr146-202ENSMUST00000053120 1040 ntBASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cpsf1Q9EPU4 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Cpsf1Q9EPU4 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cpsf1Q9EPU4 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cpsf1Q9EPU4 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms