Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC15.08■□□□□ 0
Ubfd1Q78JW9 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Gm27702-201ENSMUST00000184512 56 ntBASIC15.07■□□□□ 0
Ubfd1Q78JW9 Mir7036b-201ENSMUST00000184791 63 ntBASIC15.07■□□□□ 0
Ubfd1Q78JW9 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 AC159295.1-201ENSMUST00000225326 940 ntBASIC15.07■□□□□ 0
Ubfd1Q78JW9 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.07■□□□□ 0
Ubfd1Q78JW9 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ubfd1Q78JW9 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Bloc1s5-203ENSMUST00000224902 612 ntBASIC15.06■□□□□ 0
Ubfd1Q78JW9 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.06■□□□□ 0
Ubfd1Q78JW9 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ubfd1Q78JW9 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ubfd1Q78JW9 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC15.05■□□□□ 0
Ubfd1Q78JW9 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ubfd1Q78JW9 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.05■□□□□ 0
Ubfd1Q78JW9 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ubfd1Q78JW9 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ubfd1Q78JW9 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Ubfd1Q78JW9 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.05■□□□□ 0
Ubfd1Q78JW9 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ubfd1Q78JW9 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Ubfd1Q78JW9 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.05■□□□□ -0
Ubfd1Q78JW9 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.05■□□□□ -0
Ubfd1Q78JW9 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC15.05■□□□□ -0
Ubfd1Q78JW9 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC15.05■□□□□ -0
Ubfd1Q78JW9 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubfd1Q78JW9 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ubfd1Q78JW9 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms