Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC20.01■□□□□ 0.79
Trim28Q62318 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC20■□□□□ 0.79
Trim28Q62318 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC20■□□□□ 0.79
Trim28Q62318 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC20■□□□□ 0.79
Trim28Q62318 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Trim28Q62318 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Trim28Q62318 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Trim28Q62318 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim28Q62318 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC19.99■□□□□ 0.79
Trim28Q62318 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC19.99■□□□□ 0.79
Trim28Q62318 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC19.99■□□□□ 0.79
Trim28Q62318 Rprl2-201ENSMUST00000157150 290 ntBASIC19.99■□□□□ 0.79
Trim28Q62318 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC19.99■□□□□ 0.79
Trim28Q62318 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC19.99■□□□□ 0.79
Trim28Q62318 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC19.99■□□□□ 0.79
Trim28Q62318 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC19.99■□□□□ 0.79
Trim28Q62318 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Trim28Q62318 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim28Q62318 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Trim28Q62318 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC19.98■□□□□ 0.79
Trim28Q62318 Gm14701-201ENSMUST00000117156 348 ntBASIC19.98■□□□□ 0.79
Trim28Q62318 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC19.98■□□□□ 0.79
Trim28Q62318 Gm18057-201ENSMUST00000208220 503 ntBASIC19.98■□□□□ 0.79
Trim28Q62318 CT010506.4-201ENSMUST00000225457 351 ntBASIC19.98■□□□□ 0.79
Trim28Q62318 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Celf4-206ENSMUST00000224553 1729 ntBASIC19.98■□□□□ 0.79
Trim28Q62318 Gm27528-202ENSMUST00000222916 2012 ntBASIC19.98■□□□□ 0.79
Trim28Q62318 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 AC126250.1-201ENSMUST00000228343 1768 ntBASIC19.98■□□□□ 0.79
Trim28Q62318 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim28Q62318 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Trim28Q62318 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Gm44616-201ENSMUST00000206417 1732 ntBASIC19.97■□□□□ 0.79
Trim28Q62318 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
Trim28Q62318 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
Trim28Q62318 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Trim28Q62318 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC19.97■□□□□ 0.79
Trim28Q62318 Gm43474-201ENSMUST00000196415 774 ntBASIC19.97■□□□□ 0.79
Trim28Q62318 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim28Q62318 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC19.97■□□□□ 0.79
Trim28Q62318 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Trim28Q62318 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Trim28Q62318 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim28Q62318 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim28Q62318 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC19.97■□□□□ 0.79
Trim28Q62318 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim28Q62318 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim28Q62318 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim28Q62318 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC19.96■□□□□ 0.79
Trim28Q62318 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trim28Q62318 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC19.96■□□□□ 0.79
Trim28Q62318 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC19.96■□□□□ 0.79
Trim28Q62318 Gm5312-201ENSMUST00000203728 547 ntBASIC19.96■□□□□ 0.79
Trim28Q62318 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC19.96■□□□□ 0.79
Trim28Q62318 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC19.96■□□□□ 0.79
Trim28Q62318 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim28Q62318 CT025626.1-201ENSMUST00000223735 1455 ntBASIC19.96■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms