Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
ShhQ62226 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
ShhQ62226 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC14.44□□□□□ -0.1
ShhQ62226 Gm13036-201ENSMUST00000117799 748 ntBASIC14.44□□□□□ -0.1
ShhQ62226 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.44□□□□□ -0.1
ShhQ62226 Gm27628-201ENSMUST00000184911 107 ntBASIC14.44□□□□□ -0.1
ShhQ62226 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.44□□□□□ -0.1
ShhQ62226 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
ShhQ62226 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.44□□□□□ -0.1
ShhQ62226 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
ShhQ62226 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.43□□□□□ -0.1
ShhQ62226 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.43□□□□□ -0.1
ShhQ62226 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.43□□□□□ -0.1
ShhQ62226 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.43□□□□□ -0.1
ShhQ62226 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC14.43□□□□□ -0.1
ShhQ62226 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC14.43□□□□□ -0.1
ShhQ62226 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.43□□□□□ -0.1
ShhQ62226 Gm10175-201ENSMUST00000086013 645 ntBASIC14.43□□□□□ -0.1
ShhQ62226 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.43□□□□□ -0.1
ShhQ62226 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ShhQ62226 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
ShhQ62226 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
ShhQ62226 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
ShhQ62226 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
ShhQ62226 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
ShhQ62226 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
ShhQ62226 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC14.42□□□□□ -0.1
ShhQ62226 Gm44872-201ENSMUST00000207864 420 ntBASIC14.42□□□□□ -0.1
ShhQ62226 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ShhQ62226 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC14.41□□□□□ -0.1
ShhQ62226 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.41□□□□□ -0.1
ShhQ62226 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
ShhQ62226 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
ShhQ62226 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.41□□□□□ -0.1
ShhQ62226 Gm25911-201ENSMUST00000157621 56 ntBASIC14.41□□□□□ -0.1
ShhQ62226 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Gm7506-201ENSMUST00000207758 815 ntBASIC14.41□□□□□ -0.1
ShhQ62226 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.41□□□□□ -0.1
ShhQ62226 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC14.41□□□□□ -0.1
ShhQ62226 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.41□□□□□ -0.1
ShhQ62226 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC14.41□□□□□ -0.1
ShhQ62226 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
ShhQ62226 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 92.7 ms