Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav6d-4Q5R1I0 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Gm14722-201ENSMUST00000118943 689 ntBASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Gm12260-201ENSMUST00000122447 411 ntBASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Gm4899-201ENSMUST00000178708 719 ntBASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6d-4Q5R1I0 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Gm11873-201ENSMUST00000117877 1304 ntBASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Gm8000-201ENSMUST00000188378 592 ntBASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 AC147366.1-201ENSMUST00000227671 852 ntBASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6d-4Q5R1I0 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Gm11779-201ENSMUST00000118541 368 ntBASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Gm9727-201ENSMUST00000161387 555 ntBASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 AC160980.1-201ENSMUST00000224136 970 ntBASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6d-4Q5R1I0 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms