Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Usp28Q5I043 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.6■□□□□ 0.41
Usp28Q5I043 Gm7506-201ENSMUST00000207758 815 ntBASIC17.6■□□□□ 0.41
Usp28Q5I043 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17.6■□□□□ 0.41
Usp28Q5I043 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Usp28Q5I043 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.6■□□□□ 0.41
Usp28Q5I043 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.6■□□□□ 0.41
Usp28Q5I043 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp28Q5I043 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Usp28Q5I043 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Usp28Q5I043 Gm27704-201ENSMUST00000185094 107 ntBASIC17.59■□□□□ 0.41
Usp28Q5I043 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Gm18622-201ENSMUST00000219361 595 ntBASIC17.59■□□□□ 0.41
Usp28Q5I043 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.59■□□□□ 0.41
Usp28Q5I043 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Usp28Q5I043 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp28Q5I043 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Usp28Q5I043 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.59■□□□□ 0.41
Usp28Q5I043 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Usp28Q5I043 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
Usp28Q5I043 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC17.58■□□□□ 0.41
Usp28Q5I043 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.58■□□□□ 0.41
Usp28Q5I043 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Usp28Q5I043 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Usp28Q5I043 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
Usp28Q5I043 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Usp28Q5I043 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.58■□□□□ 0.4
Usp28Q5I043 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Usp28Q5I043 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.58■□□□□ 0.4
Usp28Q5I043 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Usp28Q5I043 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
Usp28Q5I043 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp28Q5I043 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.57■□□□□ 0.4
Usp28Q5I043 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Usp28Q5I043 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Usp28Q5I043 Gm4459-201ENSMUST00000118750 468 ntBASIC17.57■□□□□ 0.4
Usp28Q5I043 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Usp28Q5I043 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
Usp28Q5I043 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Usp28Q5I043 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp28Q5I043 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp28Q5I043 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms