Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Gm15487-201ENSMUST00000122373 465 ntBASIC17.98■□□□□ 0.47
Col1a1P11087 Gm27920-201ENSMUST00000183953 96 ntBASIC17.98■□□□□ 0.47
Col1a1P11087 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Col1a1P11087 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Col1a1P11087 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Col1a1P11087 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Col1a1P11087 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Col1a1P11087 Gm7653-201ENSMUST00000214567 508 ntBASIC17.97■□□□□ 0.47
Col1a1P11087 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col1a1P11087 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Col1a1P11087 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.97■□□□□ 0.47
Col1a1P11087 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Col1a1P11087 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC17.96■□□□□ 0.47
Col1a1P11087 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Gm18766-201ENSMUST00000189811 808 ntBASIC17.96■□□□□ 0.47
Col1a1P11087 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.96■□□□□ 0.47
Col1a1P11087 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Col1a1P11087 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC17.96■□□□□ 0.47
Col1a1P11087 Gm7775-201ENSMUST00000218871 853 ntBASIC17.96■□□□□ 0.47
Col1a1P11087 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Col1a1P11087 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
Col1a1P11087 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC17.96■□□□□ 0.47
Col1a1P11087 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.96■□□□□ 0.47
Col1a1P11087 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col1a1P11087 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Col1a1P11087 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Col1a1P11087 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Col1a1P11087 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.95■□□□□ 0.46
Col1a1P11087 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Col1a1P11087 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC17.95■□□□□ 0.46
Col1a1P11087 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC17.95■□□□□ 0.46
Col1a1P11087 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Col1a1P11087 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
Col1a1P11087 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.95■□□□□ 0.46
Col1a1P11087 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Col1a1P11087 Gm3365-201ENSMUST00000216296 1480 ntBASIC17.95■□□□□ 0.46
Col1a1P11087 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Gm16215-201ENSMUST00000161990 637 ntBASIC17.95■□□□□ 0.46
Col1a1P11087 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col1a1P11087 Gm8597-201ENSMUST00000191525 1109 ntBASIC17.95■□□□□ 0.46
Col1a1P11087 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC17.95■□□□□ 0.46
Col1a1P11087 AC135669.1-201ENSMUST00000213585 412 ntBASIC17.95■□□□□ 0.46
Col1a1P11087 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Col1a1P11087 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC17.95■□□□□ 0.46
Col1a1P11087 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Col1a1P11087 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Col1a1P11087 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Col1a1P11087 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms