Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 AC151836.1-202ENSMUST00000226259 753 ntBASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Gm38318-201ENSMUST00000195769 1706 ntBASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim47Q8C0E3 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 AC131709.1-201ENSMUST00000224731 1180 ntBASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim47Q8C0E3 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Best4-ps-201ENSMUST00000129783 1380 ntBASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Gm14722-201ENSMUST00000118943 689 ntBASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Gm25925-201ENSMUST00000158314 306 ntBASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Gm43332-201ENSMUST00000202511 1044 ntBASIC17.16■□□□□ 0.34
Trim47Q8C0E3 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Trim47Q8C0E3 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Gm12260-201ENSMUST00000122447 411 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Gm9727-201ENSMUST00000161387 555 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Dancr-204ENSMUST00000132389 2347 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim47Q8C0E3 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trim47Q8C0E3 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms