Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Col12a1Q60847 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC15.18■□□□□ 0.02
Col12a1Q60847 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Col12a1Q60847 Gm26596-201ENSMUST00000180464 2655 ntBASIC15.18■□□□□ 0.02
Col12a1Q60847 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col12a1Q60847 Cd63-ps-201ENSMUST00000145417 875 ntBASIC15.18■□□□□ 0.02
Col12a1Q60847 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.18■□□□□ 0.02
Col12a1Q60847 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC15.18■□□□□ 0.02
Col12a1Q60847 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC15.17■□□□□ 0.02
Col12a1Q60847 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Col12a1Q60847 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC15.17■□□□□ 0.02
Col12a1Q60847 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Col12a1Q60847 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC15.17■□□□□ 0.02
Col12a1Q60847 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col12a1Q60847 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.16■□□□□ 0.02
Col12a1Q60847 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC15.16■□□□□ 0.02
Col12a1Q60847 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC15.16■□□□□ 0.02
Col12a1Q60847 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col12a1Q60847 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC15.16■□□□□ 0.02
Col12a1Q60847 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Gm11543-201ENSMUST00000120758 370 ntBASIC15.15■□□□□ 0.02
Col12a1Q60847 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Gm6257-201ENSMUST00000163864 910 ntBASIC15.15■□□□□ 0.02
Col12a1Q60847 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col12a1Q60847 Gm5566-201ENSMUST00000116118 459 ntBASIC15.15■□□□□ 0.02
Col12a1Q60847 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC15.15■□□□□ 0.02
Col12a1Q60847 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC15.15■□□□□ 0.02
Col12a1Q60847 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Gm21854-201ENSMUST00000179901 471 ntBASIC15.14■□□□□ 0.01
Col12a1Q60847 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC15.14■□□□□ 0.01
Col12a1Q60847 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Col12a1Q60847 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC15.14■□□□□ 0.01
Col12a1Q60847 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col12a1Q60847 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col12a1Q60847 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms