Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Scn1bP97952 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Scn1bP97952 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.23□□□□□ -0.13
Scn1bP97952 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Scn1bP97952 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scn1bP97952 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Scn1bP97952 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC14.22□□□□□ -0.13
Scn1bP97952 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.22□□□□□ -0.13
Scn1bP97952 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Scn1bP97952 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 Gm38027-201ENSMUST00000192315 235 ntBASIC14.22□□□□□ -0.13
Scn1bP97952 Gm9731-201ENSMUST00000209480 747 ntBASIC14.22□□□□□ -0.13
Scn1bP97952 AC153881.1-201ENSMUST00000214448 284 ntBASIC14.22□□□□□ -0.13
Scn1bP97952 AC156016.1-201ENSMUST00000227190 1035 ntBASIC14.22□□□□□ -0.13
Scn1bP97952 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.22□□□□□ -0.13
Scn1bP97952 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
Scn1bP97952 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn1bP97952 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Scn1bP97952 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.21□□□□□ -0.13
Scn1bP97952 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.21□□□□□ -0.13
Scn1bP97952 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC14.21□□□□□ -0.13
Scn1bP97952 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC14.21□□□□□ -0.13
Scn1bP97952 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Scn1bP97952 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.21□□□□□ -0.13
Scn1bP97952 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.21□□□□□ -0.13
Scn1bP97952 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn1bP97952 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Scn1bP97952 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Scn1bP97952 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Scn1bP97952 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC14.21□□□□□ -0.14
Scn1bP97952 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Scn1bP97952 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Scn1bP97952 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Scn1bP97952 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.2□□□□□ -0.14
Scn1bP97952 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn1bP97952 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Scn1bP97952 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms