Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sox1P53783 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Sox1P53783 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Sox1P53783 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Sox1P53783 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Sox1P53783 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Gm14042-201ENSMUST00000120139 833 ntBASIC15.8■□□□□ 0.12
Sox1P53783 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC15.8■□□□□ 0.12
Sox1P53783 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.8■□□□□ 0.12
Sox1P53783 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC15.8■□□□□ 0.12
Sox1P53783 Gm18827-201ENSMUST00000188341 790 ntBASIC15.8■□□□□ 0.12
Sox1P53783 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sox1P53783 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Sox1P53783 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC15.79■□□□□ 0.12
Sox1P53783 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC15.79■□□□□ 0.12
Sox1P53783 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.79■□□□□ 0.12
Sox1P53783 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.79■□□□□ 0.12
Sox1P53783 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC15.79■□□□□ 0.12
Sox1P53783 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.79■□□□□ 0.12
Sox1P53783 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC15.79■□□□□ 0.12
Sox1P53783 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.79■□□□□ 0.12
Sox1P53783 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
Sox1P53783 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Sox1P53783 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC15.79■□□□□ 0.12
Sox1P53783 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Sox1P53783 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sox1P53783 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Sox1P53783 AC131068.2-201ENSMUST00000226175 1453 ntBASIC15.78■□□□□ 0.12
Sox1P53783 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC15.78■□□□□ 0.12
Sox1P53783 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Sox1P53783 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC15.78■□□□□ 0.12
Sox1P53783 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Gm38225-201ENSMUST00000194001 393 ntBASIC15.78■□□□□ 0.12
Sox1P53783 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC15.78■□□□□ 0.12
Sox1P53783 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Sox1P53783 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Sox1P53783 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Sox1P53783 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Sox1P53783 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Sox1P53783 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Sox1P53783 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Sox1P53783 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sox1P53783 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms