Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Rfx1P48377 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx1P48377 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.58■□□□□ 0.56
Rfx1P48377 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx1P48377 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
Rfx1P48377 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Rfx1P48377 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.57■□□□□ 0.56
Rfx1P48377 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.57■□□□□ 0.56
Rfx1P48377 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx1P48377 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
Rfx1P48377 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
Rfx1P48377 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC18.56■□□□□ 0.56
Rfx1P48377 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.56■□□□□ 0.56
Rfx1P48377 Gm27389-201ENSMUST00000183622 195 ntBASIC18.56■□□□□ 0.56
Rfx1P48377 Mir6404-201ENSMUST00000183699 94 ntBASIC18.56■□□□□ 0.56
Rfx1P48377 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC18.56■□□□□ 0.56
Rfx1P48377 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.56■□□□□ 0.56
Rfx1P48377 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC18.56■□□□□ 0.56
Rfx1P48377 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Rfx1P48377 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Rfx1P48377 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx1P48377 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC18.56■□□□□ 0.56
Rfx1P48377 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC18.55■□□□□ 0.56
Rfx1P48377 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Rfx1P48377 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Rfx1P48377 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC18.55■□□□□ 0.56
Rfx1P48377 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Rfx1P48377 Gm6257-201ENSMUST00000163864 910 ntBASIC18.55■□□□□ 0.56
Rfx1P48377 Gm43799-201ENSMUST00000201845 579 ntBASIC18.55■□□□□ 0.56
Rfx1P48377 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.55■□□□□ 0.56
Rfx1P48377 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.55■□□□□ 0.56
Rfx1P48377 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.55■□□□□ 0.56
Rfx1P48377 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx1P48377 Gm13034-201ENSMUST00000121342 3177 ntBASIC18.54■□□□□ 0.56
Rfx1P48377 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx1P48377 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
Rfx1P48377 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Rfx1P48377 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx1P48377 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.54■□□□□ 0.56
Rfx1P48377 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Rfx1P48377 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.54■□□□□ 0.56
Rfx1P48377 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx1P48377 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx1P48377 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Rfx1P48377 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx1P48377 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.54■□□□□ 0.56
Rfx1P48377 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx1P48377 Ap5m1-205ENSMUST00000227431 3757 ntBASIC18.54■□□□□ 0.56
Rfx1P48377 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx1P48377 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC18.53■□□□□ 0.56
Rfx1P48377 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC18.53■□□□□ 0.56
Rfx1P48377 Gm7669-201ENSMUST00000210184 1603 ntBASIC18.53■□□□□ 0.56
Rfx1P48377 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Rfx1P48377 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx1P48377 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms