Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sdc1P18828 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sdc1P18828 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sdc1P18828 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sdc1P18828 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sdc1P18828 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Sdc1P18828 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC12.79□□□□□ -0.36
Sdc1P18828 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Sdc1P18828 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sdc1P18828 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sdc1P18828 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Sdc1P18828 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Sdc1P18828 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Sdc1P18828 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Sdc1P18828 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC12.78□□□□□ -0.36
Sdc1P18828 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC12.78□□□□□ -0.36
Sdc1P18828 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sdc1P18828 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sdc1P18828 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC12.78□□□□□ -0.36
Sdc1P18828 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sdc1P18828 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Zfp264-201ENSMUST00000208656 1563 ntBASIC12.77□□□□□ -0.36
Sdc1P18828 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Sdc1P18828 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
Sdc1P18828 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Sdc1P18828 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC12.77□□□□□ -0.36
Sdc1P18828 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Sdc1P18828 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sdc1P18828 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Sdc1P18828 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC12.77□□□□□ -0.37
Sdc1P18828 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC12.77□□□□□ -0.37
Sdc1P18828 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC12.77□□□□□ -0.37
Sdc1P18828 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sdc1P18828 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC12.77□□□□□ -0.37
Sdc1P18828 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC12.77□□□□□ -0.37
Sdc1P18828 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Sdc1P18828 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Sdc1P18828 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
Sdc1P18828 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC12.76□□□□□ -0.37
Sdc1P18828 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.76□□□□□ -0.37
Sdc1P18828 Gm21596-201ENSMUST00000178049 1316 ntBASIC12.76□□□□□ -0.37
Sdc1P18828 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Sdc1P18828 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sdc1P18828 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms