Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Prom1O54990 Gm13127-201ENSMUST00000118978 1389 ntBASIC17.07■□□□□ 0.32
Prom1O54990 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC17.07■□□□□ 0.32
Prom1O54990 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.07■□□□□ 0.32
Prom1O54990 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC17.07■□□□□ 0.32
Prom1O54990 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prom1O54990 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.07■□□□□ 0.32
Prom1O54990 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Prom1O54990 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Prom1O54990 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.06■□□□□ 0.32
Prom1O54990 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Prom1O54990 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Prom1O54990 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Prom1O54990 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Prom1O54990 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Prom1O54990 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC17.06■□□□□ 0.32
Prom1O54990 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Prom1O54990 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.06■□□□□ 0.32
Prom1O54990 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prom1O54990 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Prom1O54990 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Prom1O54990 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Gm6018-201ENSMUST00000216090 1306 ntBASIC17.05■□□□□ 0.32
Prom1O54990 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Prom1O54990 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC17.05■□□□□ 0.32
Prom1O54990 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Rprl2-201ENSMUST00000157150 290 ntBASIC17.05■□□□□ 0.32
Prom1O54990 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.05■□□□□ 0.32
Prom1O54990 Gm27321-201ENSMUST00000185021 205 ntBASIC17.05■□□□□ 0.32
Prom1O54990 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC17.05■□□□□ 0.32
Prom1O54990 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Prom1O54990 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.05■□□□□ 0.32
Prom1O54990 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.05■□□□□ 0.32
Prom1O54990 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prom1O54990 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Prom1O54990 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Prom1O54990 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Prom1O54990 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Prom1O54990 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.04■□□□□ 0.32
Prom1O54990 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.04■□□□□ 0.32
Prom1O54990 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Prom1O54990 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.04■□□□□ 0.32
Prom1O54990 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.04■□□□□ 0.32
Prom1O54990 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.04■□□□□ 0.32
Prom1O54990 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.04■□□□□ 0.32
Prom1O54990 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.04■□□□□ 0.32
Prom1O54990 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prom1O54990 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms