Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col13a1Q9R1N9 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col13a1Q9R1N9 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col13a1Q9R1N9 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col13a1Q9R1N9 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Col13a1Q9R1N9 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col13a1Q9R1N9 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col13a1Q9R1N9 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col13a1Q9R1N9 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col13a1Q9R1N9 Gm14117-201ENSMUST00000122417 843 ntBASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Gm9812-201ENSMUST00000061934 968 ntBASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col13a1Q9R1N9 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Col13a1Q9R1N9 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col13a1Q9R1N9 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col13a1Q9R1N9 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col13a1Q9R1N9 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Col13a1Q9R1N9 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Col13a1Q9R1N9 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col13a1Q9R1N9 AC122317.2-201ENSMUST00000218708 1248 ntBASIC19.24■□□□□ 0.67
Col13a1Q9R1N9 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Col13a1Q9R1N9 Gm45102-201ENSMUST00000207427 857 ntBASIC19.23■□□□□ 0.67
Col13a1Q9R1N9 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.23■□□□□ 0.67
Col13a1Q9R1N9 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.23■□□□□ 0.67
Col13a1Q9R1N9 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Col13a1Q9R1N9 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col13a1Q9R1N9 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Col13a1Q9R1N9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col13a1Q9R1N9 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col13a1Q9R1N9 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col13a1Q9R1N9 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col13a1Q9R1N9 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col13a1Q9R1N9 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Col13a1Q9R1N9 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col13a1Q9R1N9 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col13a1Q9R1N9 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col13a1Q9R1N9 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.19■□□□□ 0.66
Col13a1Q9R1N9 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.19■□□□□ 0.66
Col13a1Q9R1N9 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col13a1Q9R1N9 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Col13a1Q9R1N9 Gm13238-201ENSMUST00000117655 780 ntBASIC19.18■□□□□ 0.66
Col13a1Q9R1N9 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Col13a1Q9R1N9 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col13a1Q9R1N9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col13a1Q9R1N9 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.16■□□□□ 0.66
Col13a1Q9R1N9 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.16■□□□□ 0.66
Col13a1Q9R1N9 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col13a1Q9R1N9 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col13a1Q9R1N9 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col13a1Q9R1N9 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col13a1Q9R1N9 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.14■□□□□ 0.65
Col13a1Q9R1N9 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col13a1Q9R1N9 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col13a1Q9R1N9 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col13a1Q9R1N9 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.13■□□□□ 0.65
Col13a1Q9R1N9 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.13■□□□□ 0.65
Col13a1Q9R1N9 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Col13a1Q9R1N9 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.13■□□□□ 0.65
Col13a1Q9R1N9 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col13a1Q9R1N9 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col13a1Q9R1N9 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col13a1Q9R1N9 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC19.12■□□□□ 0.65
Col13a1Q9R1N9 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col13a1Q9R1N9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col13a1Q9R1N9 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col13a1Q9R1N9 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.1■□□□□ 0.65
Col13a1Q9R1N9 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col13a1Q9R1N9 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms