Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Snrnp40Q6PE01 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Snrnp40Q6PE01 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Snrnp40Q6PE01 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Snrnp40Q6PE01 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Snrnp40Q6PE01 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.41■□□□□ 0.86
Snrnp40Q6PE01 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.41■□□□□ 0.86
Snrnp40Q6PE01 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Snrnp40Q6PE01 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Snrnp40Q6PE01 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Snrnp40Q6PE01 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.39■□□□□ 0.85
Snrnp40Q6PE01 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Snrnp40Q6PE01 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Snrnp40Q6PE01 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Snrnp40Q6PE01 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Snrnp40Q6PE01 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Snrnp40Q6PE01 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Snrnp40Q6PE01 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Snrnp40Q6PE01 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.37■□□□□ 0.85
Snrnp40Q6PE01 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Snrnp40Q6PE01 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Snrnp40Q6PE01 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Snrnp40Q6PE01 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Snrnp40Q6PE01 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Snrnp40Q6PE01 Gm15820-201ENSMUST00000201566 728 ntBASIC20.35■□□□□ 0.85
Snrnp40Q6PE01 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.35■□□□□ 0.85
Snrnp40Q6PE01 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Snrnp40Q6PE01 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Snrnp40Q6PE01 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Snrnp40Q6PE01 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Snrnp40Q6PE01 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Snrnp40Q6PE01 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.33■□□□□ 0.85
Snrnp40Q6PE01 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
Snrnp40Q6PE01 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Snrnp40Q6PE01 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.32■□□□□ 0.84
Snrnp40Q6PE01 Gm13238-201ENSMUST00000117655 780 ntBASIC20.32■□□□□ 0.84
Snrnp40Q6PE01 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.32■□□□□ 0.84
Snrnp40Q6PE01 Rps24-207ENSMUST00000224568 714 ntBASIC20.32■□□□□ 0.84
Snrnp40Q6PE01 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Snrnp40Q6PE01 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Snrnp40Q6PE01 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Snrnp40Q6PE01 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Snrnp40Q6PE01 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Snrnp40Q6PE01 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
Snrnp40Q6PE01 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Gm43566-201ENSMUST00000196851 808 ntBASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Snrnp40Q6PE01 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Snrnp40Q6PE01 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Snrnp40Q6PE01 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Snrnp40Q6PE01 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Snrnp40Q6PE01 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Snrnp40Q6PE01 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.27■□□□□ 0.84
Snrnp40Q6PE01 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.27■□□□□ 0.84
Snrnp40Q6PE01 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
Snrnp40Q6PE01 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Snrnp40Q6PE01 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Snrnp40Q6PE01 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Snrnp40Q6PE01 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Snrnp40Q6PE01 Gm45444-201ENSMUST00000211394 898 ntBASIC20.25■□□□□ 0.83
Snrnp40Q6PE01 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Snrnp40Q6PE01 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
Snrnp40Q6PE01 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Snrnp40Q6PE01 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.24■□□□□ 0.83
Snrnp40Q6PE01 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.24■□□□□ 0.83
Snrnp40Q6PE01 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.24■□□□□ 0.83
Snrnp40Q6PE01 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.23■□□□□ 0.83
Snrnp40Q6PE01 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Snrnp40Q6PE01 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.23■□□□□ 0.83
Snrnp40Q6PE01 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Snrnp40Q6PE01 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Snrnp40Q6PE01 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Snrnp40Q6PE01 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Snrnp40Q6PE01 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Snrnp40Q6PE01 Gm45102-201ENSMUST00000207427 857 ntBASIC20.21■□□□□ 0.83
Snrnp40Q6PE01 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.21■□□□□ 0.83
Snrnp40Q6PE01 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Snrnp40Q6PE01 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Snrnp40Q6PE01 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.2■□□□□ 0.82
Snrnp40Q6PE01 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Snrnp40Q6PE01 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Snrnp40Q6PE01 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Snrnp40Q6PE01 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.19■□□□□ 0.82
Snrnp40Q6PE01 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Snrnp40Q6PE01 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.19■□□□□ 0.82
Snrnp40Q6PE01 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Gm14117-201ENSMUST00000122417 843 ntBASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms