Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx1P18111 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.12■□□□□ 0.49
Cdx1P18111 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx1P18111 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx1P18111 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx1P18111 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx1P18111 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx1P18111 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Cdx1P18111 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC18.11■□□□□ 0.49
Cdx1P18111 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx1P18111 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdx1P18111 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdx1P18111 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Cdx1P18111 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdx1P18111 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Cdx1P18111 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cdx1P18111 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cdx1P18111 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Cdx1P18111 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Cdx1P18111 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC18.08■□□□□ 0.48
Cdx1P18111 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cdx1P18111 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Cdx1P18111 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.07■□□□□ 0.48
Cdx1P18111 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cdx1P18111 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cdx1P18111 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cdx1P18111 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cdx1P18111 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC18.06■□□□□ 0.48
Cdx1P18111 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cdx1P18111 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Cdx1P18111 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Cdx1P18111 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Cdx1P18111 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
Cdx1P18111 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Cdx1P18111 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.05■□□□□ 0.48
Cdx1P18111 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cdx1P18111 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cdx1P18111 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cdx1P18111 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cdx1P18111 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cdx1P18111 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cdx1P18111 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cdx1P18111 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Cdx1P18111 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Cdx1P18111 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Cdx1P18111 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cdx1P18111 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cdx1P18111 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cdx1P18111 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cdx1P18111 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Cdx1P18111 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.02■□□□□ 0.48
Cdx1P18111 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cdx1P18111 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC18.02■□□□□ 0.48
Cdx1P18111 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC18.02■□□□□ 0.48
Cdx1P18111 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cdx1P18111 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Cdx1P18111 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cdx1P18111 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cdx1P18111 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdx1P18111 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdx1P18111 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdx1P18111 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Cdx1P18111 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdx1P18111 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Cdx1P18111 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdx1P18111 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18■□□□□ 0.47
Cdx1P18111 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Cdx1P18111 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cdx1P18111 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
Cdx1P18111 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdx1P18111 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdx1P18111 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdx1P18111 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC17.99■□□□□ 0.47
Cdx1P18111 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Cdx1P18111 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdx1P18111 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC17.98■□□□□ 0.47
Cdx1P18111 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdx1P18111 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.98■□□□□ 0.47
Cdx1P18111 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdx1P18111 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Cdx1P18111 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC17.98■□□□□ 0.47
Cdx1P18111 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cdx1P18111 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdx1P18111 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC17.97■□□□□ 0.47
Cdx1P18111 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Cdx1P18111 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Cdx1P18111 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdx1P18111 Gm42809-201ENSMUST00000198429 1138 ntBASIC17.96■□□□□ 0.47
Cdx1P18111 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cdx1P18111 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC17.96■□□□□ 0.47
Cdx1P18111 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdx1P18111 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Cdx1P18111 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdx1P18111 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Cdx1P18111 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdx1P18111 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdx1P18111 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdx1P18111 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdx1P18111 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cdx1P18111 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 253.7 ms