Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Nr1i3O35627 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Nr1i3O35627 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Nr1i3O35627 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
Nr1i3O35627 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC24.49■■□□□ 1.51
Nr1i3O35627 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Nr1i3O35627 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Nr1i3O35627 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Nr1i3O35627 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Nr1i3O35627 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Nr1i3O35627 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Nr1i3O35627 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Nr1i3O35627 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Nr1i3O35627 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Nr1i3O35627 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Nr1i3O35627 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Nr1i3O35627 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
Nr1i3O35627 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Nr1i3O35627 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Nr1i3O35627 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Nr1i3O35627 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Nr1i3O35627 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Nr1i3O35627 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Nr1i3O35627 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Nr1i3O35627 Gm8503-201ENSMUST00000118131 455 ntBASIC24.44■■□□□ 1.5
Nr1i3O35627 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC24.44■■□□□ 1.5
Nr1i3O35627 AC131739.1-201ENSMUST00000221692 1245 ntBASIC24.44■■□□□ 1.5
Nr1i3O35627 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Nr1i3O35627 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Nr1i3O35627 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Nr1i3O35627 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC24.43■■□□□ 1.5
Nr1i3O35627 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC24.43■■□□□ 1.5
Nr1i3O35627 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Nr1i3O35627 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Nr1i3O35627 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Nr1i3O35627 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Nr1i3O35627 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Nr1i3O35627 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Nr1i3O35627 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Nr1i3O35627 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Nr1i3O35627 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Nr1i3O35627 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC24.4■■□□□ 1.5
Nr1i3O35627 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Nr1i3O35627 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC24.4■■□□□ 1.5
Nr1i3O35627 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC24.39■■□□□ 1.5
Nr1i3O35627 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Nr1i3O35627 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Nr1i3O35627 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Nr1i3O35627 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC24.38■■□□□ 1.49
Nr1i3O35627 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC24.38■■□□□ 1.49
Nr1i3O35627 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
Nr1i3O35627 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Nr1i3O35627 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Nr1i3O35627 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Nr1i3O35627 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
Nr1i3O35627 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Nr1i3O35627 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Nr1i3O35627 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
Nr1i3O35627 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Nr1i3O35627 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC24.35■■□□□ 1.49
Nr1i3O35627 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Nr1i3O35627 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Nr1i3O35627 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Nr1i3O35627 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC24.34■■□□□ 1.49
Nr1i3O35627 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
Nr1i3O35627 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Nr1i3O35627 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
Nr1i3O35627 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Nr1i3O35627 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Nr1i3O35627 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Nr1i3O35627 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Nr1i3O35627 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Nr1i3O35627 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Nr1i3O35627 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC24.31■■□□□ 1.48
Nr1i3O35627 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Nr1i3O35627 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Nr1i3O35627 Gm13889-201ENSMUST00000099689 1386 ntBASIC24.31■■□□□ 1.48
Nr1i3O35627 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Nr1i3O35627 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC24.31■■□□□ 1.48
Nr1i3O35627 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Nr1i3O35627 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Nr1i3O35627 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Nr1i3O35627 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC24.3■■□□□ 1.48
Nr1i3O35627 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Nr1i3O35627 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
Nr1i3O35627 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Nr1i3O35627 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Nr1i3O35627 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Nr1i3O35627 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Nr1i3O35627 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Nr1i3O35627 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Nr1i3O35627 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Nr1i3O35627 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
Nr1i3O35627 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Nr1i3O35627 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Nr1i3O35627 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Nr1i3O35627 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Nr1i3O35627 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Nr1i3O35627 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
Nr1i3O35627 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.24■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms