Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Smc1aQ9CU62 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
Smc1aQ9CU62 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Smc1aQ9CU62 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Smc1aQ9CU62 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Smc1aQ9CU62 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Smc1aQ9CU62 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Smc1aQ9CU62 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Smc1aQ9CU62 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Smc1aQ9CU62 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Smc1aQ9CU62 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
Smc1aQ9CU62 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Gm27867-201ENSMUST00000184778 125 ntBASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Gm44454-201ENSMUST00000198541 138 ntBASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Smc1aQ9CU62 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.38■□□□□ 0.37
Smc1aQ9CU62 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Smc1aQ9CU62 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Gm7862-201ENSMUST00000121461 292 ntBASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Gm5712-201ENSMUST00000199748 1043 ntBASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Gm44430-201ENSMUST00000203376 995 ntBASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Gm6296-201ENSMUST00000222599 943 ntBASIC17.37■□□□□ 0.37
Smc1aQ9CU62 AC138767.1-201ENSMUST00000222661 415 ntBASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.37■□□□□ 0.37
Smc1aQ9CU62 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Smc1aQ9CU62 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms