Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Cmtm5-203ENSMUST00000227441 610 ntBASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nup88Q8CEC0 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Gm6376-201ENSMUST00000209407 580 ntBASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nup88Q8CEC0 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Nup88Q8CEC0 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nup88Q8CEC0 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nup88Q8CEC0 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
Nup88Q8CEC0 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
Nup88Q8CEC0 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44357-201ENSMUST00000195897 142 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm19658-201ENSMUST00000196231 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44367-201ENSMUST00000196836 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44350-201ENSMUST00000197197 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44390-201ENSMUST00000197533 144 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44313-201ENSMUST00000198018 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44486-201ENSMUST00000198508 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44314-201ENSMUST00000199263 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44394-201ENSMUST00000199558 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44484-201ENSMUST00000199873 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44466-201ENSMUST00000200264 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm44359-201ENSMUST00000200671 138 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Gm2651-201ENSMUST00000203560 838 ntBASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC18.33■□□□□ 0.52
Nup88Q8CEC0 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms