Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.24■□□□□ 0.35
Ift88Q61371 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.24■□□□□ 0.35
Ift88Q61371 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Ift88Q61371 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ift88Q61371 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
Ift88Q61371 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 AC174678.1-201ENSMUST00000228007 2749 ntBASIC17.23■□□□□ 0.35
Ift88Q61371 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Ift88Q61371 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.23■□□□□ 0.35
Ift88Q61371 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Ift88Q61371 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.23■□□□□ 0.35
Ift88Q61371 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ift88Q61371 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Ift88Q61371 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.22■□□□□ 0.35
Ift88Q61371 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC17.22■□□□□ 0.35
Ift88Q61371 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.22■□□□□ 0.35
Ift88Q61371 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.22■□□□□ 0.35
Ift88Q61371 Gm6345-202ENSMUST00000180900 204 ntBASIC17.22■□□□□ 0.35
Ift88Q61371 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.22■□□□□ 0.35
Ift88Q61371 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Ift88Q61371 AC127302.2-201ENSMUST00000215212 268 ntBASIC17.22■□□□□ 0.35
Ift88Q61371 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Ift88Q61371 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC17.22■□□□□ 0.35
Ift88Q61371 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Ift88Q61371 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.22■□□□□ 0.35
Ift88Q61371 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ift88Q61371 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.21■□□□□ 0.35
Ift88Q61371 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Ift88Q61371 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Ift88Q61371 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Ift88Q61371 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.21■□□□□ 0.35
Ift88Q61371 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC17.21■□□□□ 0.35
Ift88Q61371 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Ift88Q61371 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ift88Q61371 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.21■□□□□ 0.35
Ift88Q61371 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ift88Q61371 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ift88Q61371 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ift88Q61371 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Ift88Q61371 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ift88Q61371 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC17.2■□□□□ 0.34
Ift88Q61371 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ift88Q61371 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ift88Q61371 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ift88Q61371 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Ift88Q61371 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ift88Q61371 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms