Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Mir449b-201ENSMUST00000104833 80 ntBASIC13.25□□□□□ -0.29
Col8a1Q00780 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Col8a1Q00780 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Gm18889-201ENSMUST00000174284 929 ntBASIC13.25□□□□□ -0.29
Col8a1Q00780 Gm5866-201ENSMUST00000177881 973 ntBASIC13.25□□□□□ -0.29
Col8a1Q00780 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.25□□□□□ -0.29
Col8a1Q00780 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Haglr-201ENSMUST00000100000 2085 ntBASIC13.25□□□□□ -0.29
Col8a1Q00780 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Grk6-207ENSMUST00000225925 2769 ntBASIC13.25□□□□□ -0.29
Col8a1Q00780 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC13.25□□□□□ -0.29
Col8a1Q00780 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col8a1Q00780 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC13.24□□□□□ -0.29
Col8a1Q00780 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col8a1Q00780 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC13.24□□□□□ -0.29
Col8a1Q00780 Gm13823-201ENSMUST00000119930 345 ntBASIC13.24□□□□□ -0.29
Col8a1Q00780 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.24□□□□□ -0.29
Col8a1Q00780 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Col8a1Q00780 Gm27437-201ENSMUST00000183429 107 ntBASIC13.24□□□□□ -0.29
Col8a1Q00780 Gm27301-201ENSMUST00000184012 127 ntBASIC13.24□□□□□ -0.29
Col8a1Q00780 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Gm36967-201ENSMUST00000193814 266 ntBASIC13.24□□□□□ -0.29
Col8a1Q00780 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Col8a1Q00780 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Col8a1Q00780 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 AC132265.1-201ENSMUST00000219233 1665 ntBASIC13.24□□□□□ -0.29
Col8a1Q00780 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col8a1Q00780 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col8a1Q00780 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.23□□□□□ -0.29
Col8a1Q00780 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms