Protein–RNA interactions for Protein: P56183

Rrp1, Ribosomal RNA processing protein 1 homolog A, mousemouse

Known RBP Predictions only

Length 494 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rrp1P56183 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Rrp1P56183 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Rrp1P56183 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Gm6623-201ENSMUST00000173570 544 ntBASIC17.56■□□□□ 0.4
Rrp1P56183 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC17.56■□□□□ 0.4
Rrp1P56183 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 Sybu-209ENSMUST00000228639 4113 ntBASIC17.56■□□□□ 0.4
Rrp1P56183 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rrp1P56183 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.55■□□□□ 0.4
Rrp1P56183 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Rrp1P56183 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.55■□□□□ 0.4
Rrp1P56183 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.55■□□□□ 0.4
Rrp1P56183 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rrp1P56183 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.55■□□□□ 0.4
Rrp1P56183 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.54■□□□□ 0.4
Rrp1P56183 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Rrp1P56183 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.54■□□□□ 0.4
Rrp1P56183 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.54■□□□□ 0.4
Rrp1P56183 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Rrp1P56183 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.54■□□□□ 0.4
Rrp1P56183 Gm6659-201ENSMUST00000174752 547 ntBASIC17.54■□□□□ 0.4
Rrp1P56183 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.54■□□□□ 0.4
Rrp1P56183 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Rrp1P56183 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Rrp1P56183 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rrp1P56183 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Gm37736-201ENSMUST00000193564 2802 ntBASIC17.53■□□□□ 0.4
Rrp1P56183 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.53■□□□□ 0.4
Rrp1P56183 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Rrp1P56183 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Gm23634-201ENSMUST00000175071 91 ntBASIC17.53■□□□□ 0.4
Rrp1P56183 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.53■□□□□ 0.4
Rrp1P56183 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
Rrp1P56183 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
Rrp1P56183 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.53■□□□□ 0.4
Rrp1P56183 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rrp1P56183 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.52■□□□□ 0.4
Rrp1P56183 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.52■□□□□ 0.4
Rrp1P56183 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Rrp1P56183 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rrp1P56183 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms