Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Celf4-206ENSMUST00000224553 1729 ntBASIC17.5■□□□□ 0.39
Col2a1P28481 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col2a1P28481 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col2a1P28481 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.5■□□□□ 0.39
Col2a1P28481 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.5■□□□□ 0.39
Col2a1P28481 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.5■□□□□ 0.39
Col2a1P28481 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.5■□□□□ 0.39
Col2a1P28481 Gm10576-201ENSMUST00000191927 825 ntBASIC17.5■□□□□ 0.39
Col2a1P28481 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col2a1P28481 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.49■□□□□ 0.39
Col2a1P28481 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col2a1P28481 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Gm13233-201ENSMUST00000118760 1443 ntBASIC17.49■□□□□ 0.39
Col2a1P28481 Gm13244-201ENSMUST00000118855 1446 ntBASIC17.49■□□□□ 0.39
Col2a1P28481 Gm15593-201ENSMUST00000122085 1008 ntBASIC17.49■□□□□ 0.39
Col2a1P28481 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC17.49■□□□□ 0.39
Col2a1P28481 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
Col2a1P28481 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
Col2a1P28481 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Gm5049-201ENSMUST00000195878 1590 ntBASIC17.49■□□□□ 0.39
Col2a1P28481 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC17.49■□□□□ 0.39
Col2a1P28481 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col2a1P28481 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col2a1P28481 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Gm6018-201ENSMUST00000216090 1306 ntBASIC17.48■□□□□ 0.39
Col2a1P28481 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.48■□□□□ 0.39
Col2a1P28481 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
Col2a1P28481 Gm15693-201ENSMUST00000120470 637 ntBASIC17.48■□□□□ 0.39
Col2a1P28481 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.48■□□□□ 0.39
Col2a1P28481 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC17.48■□□□□ 0.39
Col2a1P28481 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC17.48■□□□□ 0.39
Col2a1P28481 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Col2a1P28481 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.48■□□□□ 0.39
Col2a1P28481 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col2a1P28481 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.48■□□□□ 0.39
Col2a1P28481 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Col2a1P28481 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.47■□□□□ 0.39
Col2a1P28481 Gm7336-201ENSMUST00000107041 1232 ntBASIC17.47■□□□□ 0.39
Col2a1P28481 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.47■□□□□ 0.39
Col2a1P28481 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.47■□□□□ 0.39
Col2a1P28481 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col2a1P28481 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col2a1P28481 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col2a1P28481 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col2a1P28481 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.47■□□□□ 0.39
Col2a1P28481 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms