Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC18.44■□□□□ 0.54
Col3a1P08121 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col3a1P08121 CT025626.1-201ENSMUST00000223735 1455 ntBASIC18.43■□□□□ 0.54
Col3a1P08121 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col3a1P08121 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col3a1P08121 Gm25287-201ENSMUST00000103846 110 ntBASIC18.43■□□□□ 0.54
Col3a1P08121 Gm22918-201ENSMUST00000103855 110 ntBASIC18.43■□□□□ 0.54
Col3a1P08121 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC18.43■□□□□ 0.54
Col3a1P08121 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC18.43■□□□□ 0.54
Col3a1P08121 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Col3a1P08121 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col3a1P08121 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col3a1P08121 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
Col3a1P08121 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.42■□□□□ 0.54
Col3a1P08121 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC18.42■□□□□ 0.54
Col3a1P08121 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Col3a1P08121 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC18.42■□□□□ 0.54
Col3a1P08121 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
Col3a1P08121 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Col3a1P08121 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Gm18057-201ENSMUST00000208220 503 ntBASIC18.42■□□□□ 0.54
Col3a1P08121 Gm5186-201ENSMUST00000218781 920 ntBASIC18.42■□□□□ 0.54
Col3a1P08121 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC18.42■□□□□ 0.54
Col3a1P08121 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Col3a1P08121 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col3a1P08121 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col3a1P08121 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Col3a1P08121 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Col3a1P08121 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Col3a1P08121 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col3a1P08121 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC18.41■□□□□ 0.54
Col3a1P08121 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC18.41■□□□□ 0.54
Col3a1P08121 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC18.41■□□□□ 0.54
Col3a1P08121 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Col3a1P08121 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Col3a1P08121 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col3a1P08121 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col3a1P08121 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Col3a1P08121 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col3a1P08121 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC18.41■□□□□ 0.54
Col3a1P08121 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col3a1P08121 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Col3a1P08121 Mir6956-201ENSMUST00000183598 62 ntBASIC18.4■□□□□ 0.54
Col3a1P08121 AC166341.4-201ENSMUST00000220625 123 ntBASIC18.4■□□□□ 0.54
Col3a1P08121 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Ccdc166-201ENSMUST00000182172 2584 ntBASIC18.4■□□□□ 0.54
Col3a1P08121 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC18.4■□□□□ 0.54
Col3a1P08121 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.4■□□□□ 0.54
Col3a1P08121 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Col3a1P08121 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col3a1P08121 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col3a1P08121 Gm16026-204ENSMUST00000162652 683 ntBASIC18.39■□□□□ 0.54
Col3a1P08121 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC18.39■□□□□ 0.54
Col3a1P08121 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col3a1P08121 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col3a1P08121 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col3a1P08121 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col3a1P08121 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.39■□□□□ 0.54
Col3a1P08121 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 App-207ENSMUST00000227737 2827 ntBASIC18.39■□□□□ 0.53
Col3a1P08121 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Col3a1P08121 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms