Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx55Q6ZPL9 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.7■□□□□ 0.42
Ddx55Q6ZPL9 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx55Q6ZPL9 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gm6973-201ENSMUST00000117080 721 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gm13223-201ENSMUST00000118609 747 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gm15693-201ENSMUST00000120470 637 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gm23547-201ENSMUST00000158210 271 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gm27437-201ENSMUST00000183429 107 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.69■□□□□ 0.42
Ddx55Q6ZPL9 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Gm5745-201ENSMUST00000183748 313 ntBASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Gm37277-201ENSMUST00000194052 1111 ntBASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx55Q6ZPL9 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 AC125206.2-201ENSMUST00000217454 574 ntBASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx55Q6ZPL9 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Gm27618-201ENSMUST00000183671 60 ntBASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx55Q6ZPL9 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx55Q6ZPL9 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms