Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Ift88Q61371 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ift88Q61371 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ift88Q61371 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ift88Q61371 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.27■□□□□ 0.36
Ift88Q61371 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.27■□□□□ 0.36
Ift88Q61371 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ift88Q61371 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC17.27■□□□□ 0.35
Ift88Q61371 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.27■□□□□ 0.35
Ift88Q61371 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Ift88Q61371 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Ift88Q61371 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ift88Q61371 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ift88Q61371 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ift88Q61371 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Ift88Q61371 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Ift88Q61371 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.26■□□□□ 0.35
Ift88Q61371 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.26■□□□□ 0.35
Ift88Q61371 Gm10252-201ENSMUST00000209541 832 ntBASIC17.26■□□□□ 0.35
Ift88Q61371 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.26■□□□□ 0.35
Ift88Q61371 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ift88Q61371 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Ift88Q61371 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ift88Q61371 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ift88Q61371 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Ift88Q61371 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Gm5587-201ENSMUST00000206270 674 ntBASIC17.25■□□□□ 0.35
Ift88Q61371 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Ift88Q61371 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Gm7367-201ENSMUST00000057611 492 ntBASIC17.25■□□□□ 0.35
Ift88Q61371 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Ift88Q61371 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ift88Q61371 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Ift88Q61371 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ift88Q61371 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ift88Q61371 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Ift88Q61371 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Ift88Q61371 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC17.24■□□□□ 0.35
Ift88Q61371 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ift88Q61371 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms