Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.28■□□□□ 0.36
Col11a1Q61245 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Gm42466-201ENSMUST00000202099 1301 ntBASIC17.28■□□□□ 0.36
Col11a1Q61245 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Col11a1Q61245 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col11a1Q61245 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col11a1Q61245 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC17.27■□□□□ 0.36
Col11a1Q61245 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col11a1Q61245 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Col11a1Q61245 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col11a1Q61245 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC17.27■□□□□ 0.36
Col11a1Q61245 AC125350.2-201ENSMUST00000224737 727 ntBASIC17.27■□□□□ 0.36
Col11a1Q61245 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col11a1Q61245 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col11a1Q61245 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col11a1Q61245 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Col11a1Q61245 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC17.26■□□□□ 0.35
Col11a1Q61245 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC17.26■□□□□ 0.35
Col11a1Q61245 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Col11a1Q61245 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col11a1Q61245 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Col11a1Q61245 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col11a1Q61245 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col11a1Q61245 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col11a1Q61245 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col11a1Q61245 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC17.26■□□□□ 0.35
Col11a1Q61245 Gm27838-201ENSMUST00000184829 128 ntBASIC17.26■□□□□ 0.35
Col11a1Q61245 Gm8515-201ENSMUST00000194852 576 ntBASIC17.26■□□□□ 0.35
Col11a1Q61245 Gm42612-201ENSMUST00000197986 623 ntBASIC17.26■□□□□ 0.35
Col11a1Q61245 Gm43170-201ENSMUST00000199827 612 ntBASIC17.26■□□□□ 0.35
Col11a1Q61245 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC17.26■□□□□ 0.35
Col11a1Q61245 AC131743.5-201ENSMUST00000220775 1618 ntBASIC17.26■□□□□ 0.35
Col11a1Q61245 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.26■□□□□ 0.35
Col11a1Q61245 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col11a1Q61245 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Col11a1Q61245 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col11a1Q61245 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col11a1Q61245 Gm6263-201ENSMUST00000120029 1342 ntBASIC17.25■□□□□ 0.35
Col11a1Q61245 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col11a1Q61245 Gm14042-201ENSMUST00000120139 833 ntBASIC17.25■□□□□ 0.35
Col11a1Q61245 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC17.25■□□□□ 0.35
Col11a1Q61245 AC154239.3-201ENSMUST00000226933 674 ntBASIC17.25■□□□□ 0.35
Col11a1Q61245 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Col11a1Q61245 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col11a1Q61245 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col11a1Q61245 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col11a1Q61245 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col11a1Q61245 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC17.24■□□□□ 0.35
Col11a1Q61245 Gm45384-201ENSMUST00000210451 277 ntBASIC17.24■□□□□ 0.35
Col11a1Q61245 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.24■□□□□ 0.35
Col11a1Q61245 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Col11a1Q61245 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Col11a1Q61245 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col11a1Q61245 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col11a1Q61245 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.24■□□□□ 0.35
Col11a1Q61245 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC17.24■□□□□ 0.35
Col11a1Q61245 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.24■□□□□ 0.35
Col11a1Q61245 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col11a1Q61245 Dupd1-202ENSMUST00000224735 548 ntBASIC17.24■□□□□ 0.35
Col11a1Q61245 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col11a1Q61245 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col11a1Q61245 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.23■□□□□ 0.35
Col11a1Q61245 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Col11a1Q61245 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC17.23■□□□□ 0.35
Col11a1Q61245 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Col11a1Q61245 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC17.23■□□□□ 0.35
Col11a1Q61245 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
Col11a1Q61245 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col11a1Q61245 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col11a1Q61245 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col11a1Q61245 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col11a1Q61245 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col11a1Q61245 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms