Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Gm18032-201ENSMUST00000222541 538 ntBASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ptchd3Q0EEE2 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 AC122351.1-201ENSMUST00000220467 126 ntBASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ptchd3Q0EEE2 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Gm10013-201ENSMUST00000106074 672 ntBASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Gm37722-201ENSMUST00000193757 208 ntBASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms