Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cux1P53564 Gm8096-201ENSMUST00000209921 1591 ntBASIC23.76■■□□□ 1.39
Cux1P53564 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Cux1P53564 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cux1P53564 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC23.76■■□□□ 1.39
Cux1P53564 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Cux1P53564 Gm27306-201ENSMUST00000183970 107 ntBASIC23.76■■□□□ 1.39
Cux1P53564 Gm27430-201ENSMUST00000184585 107 ntBASIC23.76■■□□□ 1.39
Cux1P53564 Gm8597-201ENSMUST00000191525 1109 ntBASIC23.76■■□□□ 1.39
Cux1P53564 Gm44333-201ENSMUST00000197168 107 ntBASIC23.76■■□□□ 1.39
Cux1P53564 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cux1P53564 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Cux1P53564 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Cux1P53564 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Cux1P53564 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC23.76■■□□□ 1.39
Cux1P53564 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC23.76■■□□□ 1.39
Cux1P53564 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Cux1P53564 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC23.75■■□□□ 1.39
Cux1P53564 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Klk2-ps-201ENSMUST00000205342 571 ntBASIC23.75■■□□□ 1.39
Cux1P53564 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC23.75■■□□□ 1.39
Cux1P53564 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Cux1P53564 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Cux1P53564 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cux1P53564 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Cux1P53564 Gm27920-201ENSMUST00000183953 96 ntBASIC23.74■■□□□ 1.39
Cux1P53564 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC23.74■■□□□ 1.39
Cux1P53564 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Cux1P53564 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Cux1P53564 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Cux1P53564 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC23.74■■□□□ 1.39
Cux1P53564 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC23.74■■□□□ 1.39
Cux1P53564 Gm19439-201ENSMUST00000198195 2273 ntBASIC23.74■■□□□ 1.39
Cux1P53564 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Cux1P53564 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Cux1P53564 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Cux1P53564 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC23.74■■□□□ 1.39
Cux1P53564 Gm9824-201ENSMUST00000178707 561 ntBASIC23.74■■□□□ 1.39
Cux1P53564 Mir6977-201ENSMUST00000184960 64 ntBASIC23.74■■□□□ 1.39
Cux1P53564 Gm42934-201ENSMUST00000196920 1345 ntBASIC23.73■■□□□ 1.39
Cux1P53564 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
Cux1P53564 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC23.73■■□□□ 1.39
Cux1P53564 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
Cux1P53564 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC23.73■■□□□ 1.39
Cux1P53564 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC23.73■■□□□ 1.39
Cux1P53564 AC164567.1-201ENSMUST00000219185 960 ntBASIC23.73■■□□□ 1.39
Cux1P53564 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC23.73■■□□□ 1.39
Cux1P53564 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cux1P53564 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
Cux1P53564 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Cux1P53564 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Gm8116-201ENSMUST00000182917 1201 ntBASIC23.72■■□□□ 1.39
Cux1P53564 Gm7556-201ENSMUST00000201178 1084 ntBASIC23.72■■□□□ 1.39
Cux1P53564 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC23.72■■□□□ 1.39
Cux1P53564 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cux1P53564 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Cux1P53564 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC23.71■■□□□ 1.39
Cux1P53564 Gm7292-201ENSMUST00000194706 2527 ntBASIC23.71■■□□□ 1.39
Cux1P53564 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC23.71■■□□□ 1.39
Cux1P53564 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cux1P53564 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC23.71■■□□□ 1.39
Cux1P53564 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC23.71■■□□□ 1.39
Cux1P53564 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC23.71■■□□□ 1.39
Cux1P53564 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Cux1P53564 Gm18737-201ENSMUST00000173594 937 ntBASIC23.71■■□□□ 1.39
Cux1P53564 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Cux1P53564 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cux1P53564 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cux1P53564 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cux1P53564 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms