Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC20.54■□□□□ 0.88
Col18a1P39061 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col18a1P39061 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col18a1P39061 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.53■□□□□ 0.88
Col18a1P39061 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col18a1P39061 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col18a1P39061 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Col18a1P39061 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC20.53■□□□□ 0.88
Col18a1P39061 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC20.53■□□□□ 0.88
Col18a1P39061 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC20.53■□□□□ 0.88
Col18a1P39061 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC20.53■□□□□ 0.88
Col18a1P39061 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Col18a1P39061 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col18a1P39061 Gm16476-201ENSMUST00000221544 139 ntBASIC20.53■□□□□ 0.88
Col18a1P39061 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col18a1P39061 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col18a1P39061 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Col18a1P39061 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Col18a1P39061 Gm13216-201ENSMUST00000117145 591 ntBASIC20.52■□□□□ 0.88
Col18a1P39061 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC20.52■□□□□ 0.88
Col18a1P39061 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC20.52■□□□□ 0.88
Col18a1P39061 AC162801.1-201ENSMUST00000220612 198 ntBASIC20.52■□□□□ 0.88
Col18a1P39061 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Col18a1P39061 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col18a1P39061 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.52■□□□□ 0.88
Col18a1P39061 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC20.51■□□□□ 0.87
Col18a1P39061 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC20.51■□□□□ 0.87
Col18a1P39061 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Col18a1P39061 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC20.51■□□□□ 0.87
Col18a1P39061 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.51■□□□□ 0.87
Col18a1P39061 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Mir1897-201ENSMUST00000122581 272 ntBASIC20.51■□□□□ 0.87
Col18a1P39061 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC20.51■□□□□ 0.87
Col18a1P39061 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.51■□□□□ 0.87
Col18a1P39061 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col18a1P39061 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Col18a1P39061 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
Col18a1P39061 Gm15824-201ENSMUST00000119516 955 ntBASIC20.5■□□□□ 0.87
Col18a1P39061 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
Col18a1P39061 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Col18a1P39061 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC20.5■□□□□ 0.87
Col18a1P39061 Gm5035-201ENSMUST00000215581 927 ntBASIC20.5■□□□□ 0.87
Col18a1P39061 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Col18a1P39061 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col18a1P39061 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col18a1P39061 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col18a1P39061 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Col18a1P39061 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col18a1P39061 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col18a1P39061 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Gm15678-201ENSMUST00000117573 960 ntBASIC20.49■□□□□ 0.87
Col18a1P39061 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC20.49■□□□□ 0.87
Col18a1P39061 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC20.49■□□□□ 0.87
Col18a1P39061 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC20.49■□□□□ 0.87
Col18a1P39061 AC164567.1-201ENSMUST00000219185 960 ntBASIC20.49■□□□□ 0.87
Col18a1P39061 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col18a1P39061 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col18a1P39061 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
Col18a1P39061 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col18a1P39061 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col18a1P39061 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC20.48■□□□□ 0.87
Col18a1P39061 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col18a1P39061 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms