Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 CT010478.1-201ENSMUST00000220747 2787 ntBASIC12.13□□□□□ -0.47
Hoxd3P09027 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC12.13□□□□□ -0.47
Hoxd3P09027 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Gm15590-201ENSMUST00000078419 552 ntBASIC12.13□□□□□ -0.47
Hoxd3P09027 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC12.13□□□□□ -0.47
Hoxd3P09027 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hoxd3P09027 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Gm6184-201ENSMUST00000120403 1261 ntBASIC12.12□□□□□ -0.47
Hoxd3P09027 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Gm27646-201ENSMUST00000183989 110 ntBASIC12.12□□□□□ -0.47
Hoxd3P09027 Gm28510-201ENSMUST00000190572 928 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Hoxd3P09027 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hoxd3P09027 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Pid1-205ENSMUST00000176720 450 ntTSL 5 BASIC12.11□□□□□ -0.47
Hoxd3P09027 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC12.11□□□□□ -0.47
Hoxd3P09027 Gm44136-201ENSMUST00000203819 1106 ntBASIC12.11□□□□□ -0.47
Hoxd3P09027 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms