Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Gm13461-201ENSMUST00000120980 662 ntBASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col6a3E9PWQ3 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Gm5187-201ENSMUST00000117317 991 ntBASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Gm5566-201ENSMUST00000116118 459 ntBASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col6a3E9PWQ3 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Gm15483-201ENSMUST00000120338 456 ntBASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col6a3E9PWQ3 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Gm24514-201ENSMUST00000174961 285 ntBASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Gm19164-201ENSMUST00000210667 640 ntBASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Gm24526-201ENSMUST00000082921 158 ntBASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Gm43289-201ENSMUST00000200537 1475 ntBASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Gm9182-201ENSMUST00000217829 639 ntBASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col6a3E9PWQ3 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Gm5161-201ENSMUST00000075243 853 ntBASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 CU024892.2-201ENSMUST00000224608 832 ntBASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col6a3E9PWQ3 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms