Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Gm27741-201ENSMUST00000185060 237 ntBASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Umpk-ps-201ENSMUST00000211897 827 ntBASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Spr-ps1-201ENSMUST00000089584 605 ntBASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Gm45212-201ENSMUST00000205831 3403 ntBASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim3Q9R1R2 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 App-207ENSMUST00000227737 2827 ntBASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim3Q9R1R2 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trim3Q9R1R2 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Trim3Q9R1R2 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trim3Q9R1R2 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trim3Q9R1R2 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trim3Q9R1R2 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Trim3Q9R1R2 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.06
Trim3Q9R1R2 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Gm7153-201ENSMUST00000117092 455 ntBASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim3Q9R1R2 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 73.4 ms