Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cpsf3Q9QXK7 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Cpsf3Q9QXK7 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cpsf3Q9QXK7 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Gm15590-201ENSMUST00000078419 552 ntBASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Cpsf3Q9QXK7 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Gm13036-201ENSMUST00000117799 748 ntBASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Gm11764-201ENSMUST00000120221 623 ntBASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Cpsf3Q9QXK7 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Cpsf3Q9QXK7 Grk6-207ENSMUST00000225925 2769 ntBASIC16.77■□□□□ 0.27
Cpsf3Q9QXK7 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Cpsf3Q9QXK7 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Cpsf3Q9QXK7 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Cpsf3Q9QXK7 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Cpsf3Q9QXK7 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms