Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdc40Q9DC48 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44357-201ENSMUST00000195897 142 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm19658-201ENSMUST00000196231 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44367-201ENSMUST00000196836 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44350-201ENSMUST00000197197 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44390-201ENSMUST00000197533 144 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44313-201ENSMUST00000198018 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44486-201ENSMUST00000198508 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44314-201ENSMUST00000199263 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44394-201ENSMUST00000199558 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44484-201ENSMUST00000199873 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44466-201ENSMUST00000200264 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm44359-201ENSMUST00000200671 138 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdc40Q9DC48 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Mir5131-201ENSMUST00000175426 93 ntBASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdc40Q9DC48 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Gm7862-201ENSMUST00000121461 292 ntBASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Mir6404-201ENSMUST00000183699 94 ntBASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Gm7506-201ENSMUST00000207758 815 ntBASIC14.49□□□□□ -0.09
Cdc40Q9DC48 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdc40Q9DC48 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms