Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ushbp1Q8R370 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.48■□□□□ 0.39
Ushbp1Q8R370 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Ushbp1Q8R370 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Asic1-205ENSMUST00000228185 1818 ntBASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ushbp1Q8R370 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms