Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Gm8344-201ENSMUST00000119813 856 ntBASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Gm19164-201ENSMUST00000210667 640 ntBASIC18.86■□□□□ 0.61
Brf1Q8CFK2 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Brf1Q8CFK2 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Brf1Q8CFK2 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Gm13337-201ENSMUST00000119183 1594 ntBASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Brf1Q8CFK2 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Brf1Q8CFK2 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Brf1Q8CFK2 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Brf1Q8CFK2 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Brf1Q8CFK2 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.83■□□□□ 0.61
Brf1Q8CFK2 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.83■□□□□ 0.61
Brf1Q8CFK2 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Brf1Q8CFK2 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Gm11452-201ENSMUST00000122376 690 ntBASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Brf1Q8CFK2 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms