Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim47Q8C0E3 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Gm45167-201ENSMUST00000208007 322 ntBASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Psmb5-202ENSMUST00000227257 622 ntBASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim47Q8C0E3 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Gm11764-201ENSMUST00000120221 623 ntBASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim47Q8C0E3 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim47Q8C0E3 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.27■□□□□ 0.35
Trim47Q8C0E3 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim47Q8C0E3 Gm37153-201ENSMUST00000193637 231 ntBASIC17.26■□□□□ 0.35
Trim47Q8C0E3 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms