Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Gm7286-201ENSMUST00000182691 1007 ntBASIC18.41■□□□□ 0.54
Trim56Q80VI1 Gm37153-201ENSMUST00000193637 231 ntBASIC18.41■□□□□ 0.54
Trim56Q80VI1 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.41■□□□□ 0.54
Trim56Q80VI1 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.41■□□□□ 0.54
Trim56Q80VI1 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Gm1401-201ENSMUST00000122048 772 ntBASIC18.4■□□□□ 0.54
Trim56Q80VI1 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Trim56Q80VI1 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.4■□□□□ 0.54
Trim56Q80VI1 Gm45167-201ENSMUST00000208007 322 ntBASIC18.4■□□□□ 0.54
Trim56Q80VI1 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.4■□□□□ 0.54
Trim56Q80VI1 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim56Q80VI1 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.39■□□□□ 0.54
Trim56Q80VI1 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim56Q80VI1 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim56Q80VI1 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim56Q80VI1 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim56Q80VI1 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.39■□□□□ 0.54
Trim56Q80VI1 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Gm11764-201ENSMUST00000120221 623 ntBASIC18.39■□□□□ 0.53
Trim56Q80VI1 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC18.39■□□□□ 0.53
Trim56Q80VI1 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim56Q80VI1 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Gm4899-201ENSMUST00000178708 719 ntBASIC18.38■□□□□ 0.53
Trim56Q80VI1 Gm27525-201ENSMUST00000184465 107 ntBASIC18.38■□□□□ 0.53
Trim56Q80VI1 AC154222.1-201ENSMUST00000223882 475 ntBASIC18.38■□□□□ 0.53
Trim56Q80VI1 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim56Q80VI1 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms