Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.21■□□□□ 0.83
Trim28Q62318 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC20.2■□□□□ 0.82
Trim28Q62318 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC20.2■□□□□ 0.82
Trim28Q62318 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Trim28Q62318 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trim28Q62318 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC20.2■□□□□ 0.82
Trim28Q62318 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC20.2■□□□□ 0.82
Trim28Q62318 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trim28Q62318 AC155252.2-201ENSMUST00000226946 680 ntBASIC20.2■□□□□ 0.82
Trim28Q62318 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC20.2■□□□□ 0.82
Trim28Q62318 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC20.2■□□□□ 0.82
Trim28Q62318 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC20.2■□□□□ 0.82
Trim28Q62318 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Trim28Q62318 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim28Q62318 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC20.19■□□□□ 0.82
Trim28Q62318 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC20.19■□□□□ 0.82
Trim28Q62318 Gm27494-201ENSMUST00000184735 189 ntBASIC20.19■□□□□ 0.82
Trim28Q62318 CT009510.1-201ENSMUST00000227972 270 ntBASIC20.19■□□□□ 0.82
Trim28Q62318 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Trim28Q62318 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim28Q62318 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim28Q62318 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC20.18■□□□□ 0.82
Trim28Q62318 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim28Q62318 Gm26308-201ENSMUST00000157768 69 ntBASIC20.18■□□□□ 0.82
Trim28Q62318 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim28Q62318 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Hivep3-201ENSMUST00000084306 2973 ntBASIC20.18■□□□□ 0.82
Trim28Q62318 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim28Q62318 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC20.17■□□□□ 0.82
Trim28Q62318 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.17■□□□□ 0.82
Trim28Q62318 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC20.17■□□□□ 0.82
Trim28Q62318 App-207ENSMUST00000227737 2827 ntBASIC20.17■□□□□ 0.82
Trim28Q62318 AC163637.1-201ENSMUST00000215491 1894 ntBASIC20.17■□□□□ 0.82
Trim28Q62318 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC20.17■□□□□ 0.82
Trim28Q62318 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Trim28Q62318 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim28Q62318 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Dancr-204ENSMUST00000132389 2347 ntBASIC20.16■□□□□ 0.82
Trim28Q62318 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trim28Q62318 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trim28Q62318 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC20.16■□□□□ 0.82
Trim28Q62318 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC20.16■□□□□ 0.82
Trim28Q62318 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trim28Q62318 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC20.16■□□□□ 0.82
Trim28Q62318 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC20.16■□□□□ 0.82
Trim28Q62318 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms