Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Usf1Q61069 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC14.19□□□□□ -0.14
Usf1Q61069 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.19□□□□□ -0.14
Usf1Q61069 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC14.19□□□□□ -0.14
Usf1Q61069 Mir6977-201ENSMUST00000184960 64 ntBASIC14.19□□□□□ -0.14
Usf1Q61069 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usf1Q61069 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Usf1Q61069 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Usf1Q61069 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Usf1Q61069 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Nudt18-203ENSMUST00000228768 1578 ntBASIC14.18□□□□□ -0.14
Usf1Q61069 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Usf1Q61069 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC14.18□□□□□ -0.14
Usf1Q61069 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Usf1Q61069 Gm12008-201ENSMUST00000117791 755 ntBASIC14.18□□□□□ -0.14
Usf1Q61069 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.18□□□□□ -0.14
Usf1Q61069 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Usf1Q61069 Gm24158-201ENSMUST00000175263 71 ntBASIC14.18□□□□□ -0.14
Usf1Q61069 Gm27622-201ENSMUST00000183779 60 ntBASIC14.18□□□□□ -0.14
Usf1Q61069 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC14.18□□□□□ -0.14
Usf1Q61069 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC14.18□□□□□ -0.14
Usf1Q61069 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Usf1Q61069 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Usf1Q61069 CT025626.1-201ENSMUST00000223735 1455 ntBASIC14.18□□□□□ -0.14
Usf1Q61069 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usf1Q61069 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
Usf1Q61069 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usf1Q61069 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usf1Q61069 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.17□□□□□ -0.14
Usf1Q61069 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.17□□□□□ -0.14
Usf1Q61069 Gm9385-201ENSMUST00000117563 472 ntBASIC14.17□□□□□ -0.14
Usf1Q61069 Gm12428-201ENSMUST00000119844 727 ntBASIC14.17□□□□□ -0.14
Usf1Q61069 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.17□□□□□ -0.14
Usf1Q61069 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usf1Q61069 Gm18057-201ENSMUST00000208220 503 ntBASIC14.17□□□□□ -0.14
Usf1Q61069 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.17□□□□□ -0.14
Usf1Q61069 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Usf1Q61069 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC14.17□□□□□ -0.14
Usf1Q61069 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usf1Q61069 Gm6018-201ENSMUST00000216090 1306 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usf1Q61069 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC14.16□□□□□ -0.14
Usf1Q61069 Gm5898-201ENSMUST00000121016 2071 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Usf1Q61069 Gm22065-201ENSMUST00000103753 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm22066-201ENSMUST00000103761 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm24932-201ENSMUST00000103763 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm24115-201ENSMUST00000103799 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm22190-201ENSMUST00000103827 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm22191-201ENSMUST00000103831 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm24721-201ENSMUST00000103849 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm28018-201ENSMUST00000103869 110 ntBASIC14.16□□□□□ -0.14
Usf1Q61069 Gm26399-201ENSMUST00000103937 110 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms